Changes in version 3.5.1 (2017-10-06) Edit reference in DESCRIPTION file Changes in version 3.5.0 Add url links to all documentation Synchronize and test with Travis Changes in version 3.4.0 Synchronize package with Git Changes in version 3.3.2 Revise examples to limit data file size Update documentation of data files Changes in version 3.3.1 Compress data files Add donttest{} statements to long examples Changes in version 3.3.0 Update terminology of sclerochronological elements Changes in version 3.2.0 Add documentation for new data files Check building of model and debug Changes in version 3.1.0 Add examples to all executable functions Add data files to allow running of examples Changes in version 3.0.0 Rebuild package with updated functions Revise and test all Rd files Revise NAMESPACE Test functions Changes in version 2.5.0 Test and debug "Oyster_phase_run" and "Oyster_combined_run" Update Rd description files Update Data files to work with new functions Debug "Oyster_run_secX" functions to streamline total model running and link functions and output Decompose "Oyster_log" function for use in aggregate functions Debug "Oyster_run_secX" functions to streamline total model running and link functions and output Decompose "Oyster_log" function for use in aggregate functions Debug "Oyster_run_secX" functions to streamline total model running and link functions and output Decompose "Oyster_log" function for use in aggregate functions Changes in version 2.4.0 Debug "Oyster_suby_phases" function Finalize "Oyster_Mass_gain" function to wrap up growth model Build plotting function into "Oyster_accumulation" step to increase user feedback Changes in version 2.3.0 Fine-tune and test BMP and TIFF import functions Test and finalize parameterization of phase maps ("Oyster_phase_matrix_BMP" and "Oyster_phase_matrix_TIF") Changes in version 2.2.0 Move "Oyster_Mass_gain" function to phase model Add heatmap plotting to "Oyster_Z_matrices" function to provide in-model user feedback Test, finalize and automate "Oyster_growth_model" function Changes in version 2.1.0 Update input file specifics to allow parsing of shell growth time (days) Update names of parameters to refer to "(sub)increments" instead of "years" Changes in version 2.0.0 Revise model mechanics to include seasonal variation in growth rates (most notably function: "Oyster_Increment_cross_section") Revise model to include growth stops Revise model to allow variable density through shell Changes in version 1.3.3 Updated personal website URL Updated date in DESCRIPTION Updated dataset Rd files First submission to CRAN Changes in version 1.3.2.9000 Create README and NEWS files Update DESCRIPTION file Changes in version 1.3.1.9000 Edited line breaks in documentation files Changes in version 1.2.1.9000 Deleded non-ASCII characters from all documentation files Edites examples to refer to paper in review Write cran-comments.md Changes in version 1.1.0.9000 Updated CITATION file to fit the correct format Run checks Changes in version 1.0.1.9000 Create description files Update data files and descriptions Run tests with data files Changes in version 0.0.0.9000 Create first version of package from R code